RESUMO
We report the first draft genome assembly for Prochilodus magdalenae, the leading representative species of the Prochilodontidae family in Colombia. This 1.2-Gb assembly, with a GC content of 42.0% and a repetitive content of around 31.0%, is in the range of previously reported characid species genomes. Annotation identified 34,725 nuclear genes, and BUSCO completeness value was 94.9%. Gene ontology and primary metabolic pathway annotations indicate similar gene profiles for P. magdalenae and the closest species with annotated genomes: blind cave fish (Astyanax mexicanus) and red piranha (Pygocentrus nattereri). A comparative analysis showed similar genome traits to other characid species. The fully sequenced and annotated mitochondrial genome reproduces the taxonomic classification of P. magdalenae and confirms the low mitochondrial genetic divergence inside the Prochilodus genus. Phylogenomic analysis, using nuclear single-copy orthologous genes, also confirmed the evolutionary position of the species. This genome assembly provides a high-resolution genetic resource for sustainable P. magdalenae management in Colombia and, as the first genome assembly for the Prochilodontidae family, will contribute to fish genomics throughout South America.
RESUMO
RESUMEN El objetivo fue criopreservar semen de bagre rayado Pseudoplatystoma magdaleniatum con tres crioprotectores internos diferentes: dimetilsulfóxido (DMSO), dimetilacetamida (DMA) y etilenglicol (ETG) a dos porcentajes de inclusiones (5 y 10%), combinados con glucosa 6%, leche en polvo descremada 3% y vitamina E (0,4%). Cinco machos en fase de espermiación fueron inducidos con 0,4 ml de Ovaprim®/Kg. El semen fue diluido en la solución crioprotectora (1:3) en tubos de 2,5 ml, congelado en vapores de nitrógeno y descongelado a 35°C durante 90 segundos. El análisis estadístico incluyó un diseño factorial 3x2 y semen fresco (SF) como tratamiento testigo. En semen fresco, precongelado y descongelado se evaluó la movilidad total (Mt), tipos de movilidad, progresividad total y velocidades espermáticas con la ayuda de Sperm Class Analyzer SCA®. El SF registró volumen de 6,1±4,3 ml, Mt de 72,6±17,1%, activación de 31,2±2,1 segundos y concentración espermática de 54,7±22,9 millones/μl. En semen precongelado, el crioprotector (p<0,05) y porcentaje de inclusión (p<0,01), pero no su interacción, tuvieron un efecto significativo en la Mt, velocidad curvilínea (VCL) y velocidad lineal (VSL); mientras que en semen descongelado sólo la interacción de los factores (p<0,05) fue significativa en Mt, porcentajes de espermatozoide estáticos y VCL. La Mt cayó entre 36-67% en semen precongelado y entre 7486% en semen descongelado con relación a SF. Los resultados sugieren que DMSO, DMA y ETG incluidos a 5 o 10%, combinados con leche en polvo 3%, glucosa 6% y vitamina E 0,4% son alternativas viables de criopreservación del semen de bagre rayado.
ABSTRACT The objective of this study was to evaluate three internal cryoprotectants to preserve semen of striped catfish (Pseudoplatystoma magdaleniatum). The cryoprotectants tested were: dimethylsulfoxide (DMSO), dimethylacetamide (DMA) and ethylene glycol (ETG) at two inclusion percentages (5 and 10%), mixed with 6% glucose, 3% skim milk powder, and 0.4% vitamin E. Five males in the spermiation phase were induced with Ovaprim® (0.4 ml/kg). The semen was diluted in the cryoprotective solution (1: 3) in 2.5 ml tubes, frozen in nitrogen vapors and thawed at 35°C for 90 seconds. A 3x2 factorial design was used, and the control treatment was fresh semen (SF). Total motility (Mt), type of motility total progressivity, and spermatic velocities were evaluated in fresh, pre-frozen and post-thawed semen using the Sperm Class Analyzer (SCA®) software. The SF volume was 6.1 ± 4.3 ml, with Mt of 72.6 ± 17.1%, activation of 31.2 ± 2.1 seconds and sperm concentration of 54.7 ± 22.9 million/μl. In the pre-frozen semen, the cryoprotectant (p <0.05) and the percentage of inclusion (p <0.01) -but not their interaction- had a significant negative effect on Mt, curvilinear velocity (VCL), and linear velocity (VSL); whereas in thawed semen only the interaction of the factors (p <0.05) was significant for Mt, static sperm percentages and VCL. The Mt decreased between 36-67% in pre-frozen semen and between 74-86% in thawed semen compared to SF. These results suggest that 5 or 10% inclusion levels of DMSO, DMA, and ETG, in combination with 3% powdered milk, 6% glucose, and 0.4% vitamin E are viable alternatives to cryopreserve semen of striped catfish.
